02622nas a2200241   4500008004100000245010400041210006900145260000800214300001400222490000700236520184500243100001402088700001702102700001402119700001402133700001502147700001502162700001402177700001802191700001502209700001802224856013802242       2004                        eng d00aPhylogeny and evolution of basils and allies (Ocimeae, Labiatae) based on three plastid DNA regions0 aPhylogeny and evolution of basils and allies Ocimeae Labiatae ba  cJan  a277–2990 v313 aA phylogeny of basils and allies (Lamiaceae, tribe Ocimeae) based on sequences of the trnL intron, trnL-trnF intergene spacer and rps 16 intron of the plastid genome is presented. Several methods were used to reconstruct phylogenies and to assess statistical support for clades: maximum parsimony with equally and successively weighted characters, bootstrap resampling, and Bayesian inference. The phylogeny is used to investigate the distribution of morphological, pericarp anatomy, chemical, and pollen characters as well as the geographical distribution of the clades. Tribe Ocimeae is monophyletic and easily diagnosable with morphological synapomorphies. There are monophyletic clades within Ocimeae that broadly correspond to currently recognised subtribes; Lavandulinae, Hyptidinae, Ociminae, and Plectranthinae. Only Lavandulinae has clear non-molecular synapomorphies. Several currently recognised genera are not monophyletic. Floral morphology consistent with sternotribic pollination is most common in Ocimeae, but there are independent departures from this model. Buzz pollination is likely in some species, the only postulated occurrence of this within Lamiaceae. Quinone diterpenoids and flavones in the leaf exudates differ in their distributions across the phylogeny and this could contribute to differences in the recorded medicinal as well as pesticidal uses of the species in the different clades. Mapping geographic distribution on to an ultrametric phylogenetic tree produced using non-parametric rate smoothing supports an Asiatic origin for Ocimeae. There are several secondary occurrences in Asia arising from the African Ociminae and Plectranthinae clades. Colonisation of Madagascar occurred at least five times, and New World colonisation occurred at least three times. (C) 2003 Elsevier Inc. All rights reserved.1 aPaton, AJ1 aSpringate, D1 aSuddee, S1 aOtieno, D1 aGrayer, RJ1 aHarley, MM1 aWillis, F1 aSimmonds, MSJ1 aPowell, MP1 aSavolainen, V  uhttps://lamiaceae.myspecies.info/content/phylogeny-and-evolution-basils-and-allies-ocimeae-labiatae-based-three-plastid-dna-regions-002537nas a2200313   4500008004100000245012000041210006900161260000800230300001400238490000700252520158900259653002501848653001701873653001701890653002001907653001901927653002201946653001201968653001401980653001301994653001402007653001002021100002102031700002902052700002702081700002302108700002202131856007002153       2002                        eng d00aOrigin of Macaronesian Sideritis L. (Lamioideae: Lamiaceae) inferred from nuclear and chloroplast sequence datasets0 aOrigin of Macaronesian Sideritis L Lamioideae Lamiaceae inferred  cJun  a293–3060 v233 aSideritis L. (Lamiaceae) comprises approximately 150 species of annuals and perennials distributed chiefly in the Mediterranean region. The majority of the species belong to the continental subgenus Sideritis which is divided into two perennial (Sideritis and Empedoclea) and two annual (Hesiodia and Burgsdorfia) sections. Twenty-three species are woody perennials endemic to the Macaronesian archipelagos of Madeira and the Canary Islands. In an effort to determine the continental origin of the insular group, we constructed independent phylogenies comprising sequence data from both chloroplast and nuclear markers. Sampling included 7 island taxa drawn from the Macaronesian subgenus Marrubiastrum and 25 continental taxa representing all four sections of subgenus Sideritis. Subgenus Marrubiastrum and the two continental perennial sections form well-supported monophyletic groups in both individual and combined analyses. The annual sections are not monophyletic in any analysis; further sampling of annual taxa is needed to resolve these relationships. All analyses identified Sideritis cossoniana, an annual species from Morocco, as the closest continental relative of the Macaronesian group. This contrasts with the hypothesis of earlier workers who suggested that the insular taxa were most closely related to eastern Mediterranean species of the genus. The phylogenies also demonstrate a distinct increase in woodiness among the Macaronesian species relative to their continental congeners, providing further support for the secondary nature of woodiness in island plants.10aBiological Evolution10aCell Nucleus10aChloroplasts10aDNA: Intergenic10aDNA: Ribosomal10aGenetic Variation10aIntrons10aPhylogeny10aPortugal10aSideritis10aSpain1 aBarber, Janet, C1 aFrancisco-Ortega, Javier1 aSantos-Guerra, Arnoldo1 aTurner, Kathryn, G1 aJansen, Robert, K  uhttp://linkinghub.elsevier.com/retrieve/pii/S1055-7903(02)00018-001850nas a2200265   4500008004100000245014500041210006900186260000800255300001200263490000700275520093500282653001701217653001701234653001701251653000801268653001701276653002501293653001401318653001901332653002401351100002301375700002401398700002501422856013701447       2004                        eng d00aPhylogenetic relationships between Clerodendrum (Lamiaceae) and other Ajugoid genera inferred from nuclear and chloroplast DNA sequence data0 aPhylogenetic relationships between Clerodendrum Lamiaceae and ot  cJul  a39–450 v323 aOver the last two centuries the circumscription of the large, pan-tropical genus Clerodendrum (Lamiaceae) has changed frequently, as different authorities have added or removed taxa on the basis of various morphological characters. With the development of molecular methods for systematic research the process of circumscribing taxa has become increasingly analytical. When morphology signals the possibility that taxa are closely related, molecular methods can be used to test the hypothesis objectively. Aegiphila, Amasonia, Huxleya, and Kalaharia are similar morphologically to Clerodendrum. In this paper we use nuclear ribosomal ITS and chloroplast ndhF sequence data to clarify the positions of these four genera relative to Clerodendrum. We show that the Australian monotypic genus Huxleya evolved from within Clerodendrum. Accordingly, we sink Huxleya into Clerodendrum and make a new combination, Clerodendrum linifolium.10aCell Nucleus10aChloroplasts10aClerodendrum10aDna10aGenes: Plant10aLikelihood Functions10aPhylogeny10aRNA: Ribosomal10aSpecies Specificity1 aSteane, Dorothy, A1 ade Kok, Rogier, P J1 aOlmstead, Richard, G  uhttps://lamiaceae.myspecies.info/content/phylogenetic-relationships-between-clerodendrum-lamiaceae-and-other-ajugoid-genera-inferred04212nas a2200337   4500008004100000245011100041210006900152260000800221300001400229490000700243520296400250653002003214653002603234653003203260653002403292653001403316653001403330653002503344653002703369653002403396653001803420653002603438653002303464653002103487653001303508653002603521100002603547700002103573700002003594856026003614       2010                        eng d00aMolecular phylogeny of Menthinae (Lamiaceae, Nepetoideae, Mentheae) - Taxonomy, biogeography and conflicts0 aMolecular phylogeny of Menthinae Lamiaceae Nepetoideae Mentheae   cJan  a501–5230 v553 aAlthough the subfamily Nepetoideae (Lamiaceae) is considered to be monophyletic, relationships between tribes, subtribes and genera within the subfamily are poorly understood as complex and possibly homoplasious morphological characters make taxa difficult to delimit. DNA sequence data from three regions (chloroplast: trnK intron; trnL-F; nuclear: ITS) in total including 278 accessions, representing 38 out of 40 genera of subtribe Menthinae and 11 outgroup genera, were used to reconstruct the evolutionary history, test previous hypotheses of classification, explain biogeographic patterns and elucidate character evolution. Using maximum parsimony (MP) and Bayesian analysis phylogenetic reconstructions based on nuclear and chloroplast sequence data were incongruent, consequently the data were analyzed separately.Both nuclear and chloroplast datasets provide strong support for three major lineages: the "Satureja", "Micromeria" and "Clinopodium" group. The first contains members of Satureja and Gontscharovia. In the second lineage Micromeria s.str. and Origanum were resolved as monophyletic, Pentapleura and Zataria indicated as sister groups. Thymbra includes two species of Satureja turning the latter genus polyphyletic. Thymus is revealed as paraphyletic with respect to Argantoniella and Saccocalyx in both and Origanum in the plastid dataset only. In the third lineage, the Clinopodium-group, branching pattern is highly incongruent among datasets and possibly influenced by recent and ancient hybridization, chloroplast capture and incomplete lineage sorting. However, identical terminal groups are inferred in both analyses. A Madagascan lineage of "Micromeria", sister to the recently described South African Killickia, is suggested to represent a new genus. The Himalayan Clinopodium nepalense group and the tropical African C. abyssinicum alliance are monophyletic but indicated in different positions. Both groups appear in the ITS phylogeny in a clade with Cyclotrichium and Mentha, relationships not suggested previously. The enigmatic Micromeria cymuligera is close to Mentha and possibly is a representative of this genus. Species of Acinos, now regarded as part of Clinopodium, are mixed up with species of Ziziphora, questioning either the inclusion of Acinos in Clinopodium or generic distinctness of Ziziphora. All data sets suggest a monophyly of the New World taxa and argue for long distance dispersal from the Old World, rather than a vicariance explanation. Bystropogon marks the split up between the two lineages. Inclusion of 22 genera intermixed with Clinopodium spp. in the New World clade provides evidence that the current circumscription of the genus is highly unnatural. Low sequence divergence resulting in low phylogenetic resolution especially at the base of the clade indicate a rapid radiation accompanied by considerable ecological diversification and speciation. (C) 2010 Elsevier Inc. All rights reserved.10aChloroplast Dna10aGeneric delimitations10aGenus Bystropogon Lamiaceae10aIsland Colonization10aLamiaceae10aMenthinae10aMicromeria Lamiaceae10aMinthostachys Labiatae10aMolecular phylogeny10aNorth-America10aNuclear Ribosomal Dna10aParsimony Analysis10aSalvia Lamiaceae10aSatureja10aScrub Mints Lamiaceae1 aBraeuchler, Christian1 aMeimberg, Harald1 aHeubl, Guenther  uhttp://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WNH-4YC2XFX-1&_user=2139813&_coverDate=05%252F31%252F2010&_rdoc=1&_fmt=high&_orig=gateway&_origin=gateway&_sort=d&_docanchor=&view=c&_acct=C000054276&_version=1&_urlVersion=0&_userid=2139813&md5=d02795nas a2200349   4500008004100000245018200041210006900223260000800292300001300300490000700313520157300320653002701893653002101920653002301941653001601964653002101980653002202001653002802023653001202051653001402063653002802077653001402105653003002119653002702149100002102176700001902197700002602216700001902242700002802261700002002289856013602309       2006                        eng d00aMolecular evidence for adaptive radiation of Micromeria Benth. (Lamiaceae) on the Canary Islands as inferred from chloroplast and nuclear DNA sequences and ISSR fingerprint data0 aMolecular evidence for adaptive radiation of Micromeria Benth La  cDec  a566–780 v413 aThe Canary Islands have been a focus for phylogeographic studies on the colonization and diversification of endemic angiosperm taxa. Based on phylogeographic patterns, both inter island colonization and adaptive radiation seem to be the driving forces for speciation in most taxa. Here, we investigated the diversification of Micromeria on the Canary Islands and Madeira at the inter- and infraspecific level using inter simple sequence repeat PCR (ISSR), the trnK-Intron and the trnT-trnL-spacer of the cpDNA and a low copy nuclear gene. The genus Micromeria (Lamiaceae, Mentheae) includes 16 species and 13 subspecies in Macaronesia. Most taxa are restricted endemics, or grow in similar ecological conditions on two islands. An exception is M. varia, a widespread species inhabits the lowland scrub on each island of the archipelago and could represent an ancestral taxon from which radiation started on the different islands. Our analyses support a split between the "eastern" islands Fuerteventura, Lanzarote and Gran Canaria and the "western" islands Tenerife, La Palma and El Hierro. The colonization of Madeira started from the western Islands, probably from Tenerife as indicated by the sequence data. We identified two lineages of Micromeria on Gomera but all other islands appear to be colonized by a single lineage, supporting adaptive radiation as the major evolutionary force for the diversification of Micromeria. We also discuss the possible role of gene flow between lineages of different Micromeria species on one island after multiple colonizations.10aAdaptation: Biological10aAtlantic Islands10aDna Fingerprinting10aDNA Primers10aDNA: Chloroplast10aGenetic Variation10aGeranyltranstransferase10aIntrons10aLamiaceae10aMolecular Sequence Data10aPhylogeny10aPolymerase Chain Reaction10aSequence Analysis: DNA1 aMeimberg, Harald1 aAbele, Tilmann1 aBräuchler, Christian1 aMcKay, John, K1 ade Paz, Pedro, L Pérez1 aHeubl, Günther  uhttps://lamiaceae.myspecies.info/content/molecular-evidence-adaptive-radiation-micromeria-benth-lamiaceae-canary-islands-inferred-000550nas a2200121   4500008004100000245013700041210006900178300001200247490000700259100001300266700001700279856013200296       2008                        eng d00aA species-level phylogenetic study of the Verbena complex (Verbenaceae) indicates two independent intergeneric chloroplast transfers0 aspecieslevel phylogenetic study of the Verbena complex Verbenace  a23–330 v481 aYuan, YW1 aOLMSTEAD, RG  uhttps://lamiaceae.myspecies.info/content/species-level-phylogenetic-study-verbena-complex-verbenaceae-indicates-two-independent02999nas a2200409   4500008004100000245018200041210006900223260000800292300001400300490000700314520162000321653002301941653001801964653001501982653001901997653001702016653001402033653000902047653001102056653001802067653001702085653001402102653001602116653001502132653001802147653001802165653001302183653000902196653001102205100002102216700001902237700002602256700001902282700002802301700002002329856024002349       2006                        eng d00aMolecular evidence for adaptive radiation of Micromeria Benth. (Lamiaceae) on the Canary Islands as inferred from chloroplast and nuclear DNA sequences and ISSR fingerprint data0 aMolecular evidence for adaptive radiation of Micromeria Benth La  cJan  a566–5780 v413 aThe Canary Islands have been a focus for phylogeographic studies on the colonization and diversification of endemic angiosperm taxa. Based on phylogeographic patterns, both inter island colonization and adaptive radiation seem to be the driving forces for speciation in most taxa. Here, we investigated the diversification of Allicromeria on the Canary Islands and Madeira at the inter- and infraspecific level using inter simple sequence repeat PCR (ISSR), the trnK-Intron and the trnT-trnL-spacer of the cpDNA and a low copy nuclear gene. The genus Micromeria (Lamiaceae, Mentheae) includes 16 species and 13 subspecies in Macaronesia. Most taxa are restricted endemics, or grow in similar ecological-conditions on two islands. An exception is M. varia, a widespread species inhabits the lowland scrub on each island of the archipelago and could represent an ancestral taxon from which radiation started on the different islands. Our analyses support a split between the "eastern" islands Fuerteventura, Lanzarote and Gran Canaria and the "western" islands Tenerife, La, Palma and El Hierro. The colonization of Madeira started from the western Islands, probably from Tenerife as indicated by the sequence data. We identified two lineages of Micromeria on Gomera but all other islands appear to be colonized by a single lineage, supporting adaptive radiation as the major evolutionary force for the diversification of Micromeria. We also discuss the possible role of gene flow between lineages of different Micromeria species on one island after multiple colonizations. (c) 2006 Elsevier Inc. All rights reserved.10aAdaptive Radiation10aAmplification10aAsteraceae10aCanary Islands10aColonization10aEvolution10aFps210aGenera10aHybridization10aIssr Markers10aLamiaceae10aMacaronesia10aMicromeria10aPhylogenetics10aRibosomal Dna10aTenerife10aTrnk10aTrnt-F1 aMeimberg, Harald1 aAbele, Tilmann1 aBraeuchler, Christian1 aMcKay, John, K1 ade Paz, Pedro, L. Perez1 aHeubl, Guenther  uhttp://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6WNH-4K48KGN-3&_user=2139813&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000054276&_version=1&_urlVersion=0&_userid=2139813&md5=2bfd7395b571326788d91322a9646cec00674nas a2200133   4500008004100000245009700041210006900138260000800207520021500215100001400430700001400444700001600458856006600474       2004                        eng d00aPhylogenetic relationships between Clerodendrum (Lamiaceae) and other Ajugoid genera łdots}0 aPhylogenetic relationships between Clerodendrum Lamiaceae and ot  cJan3 aOver the last two centuries the circumscription of the large, pan-tropical genus ( ) has changed frequently, as different authorities have added or removed taxa on the basis of various morphological characters.1 aSteane, D1 ade Kok, R1 aOlmstead, R  uhttp://linkinghub.elsevier.com/retrieve/pii/S105579030300423802986nas a2200385   4500008004100000245010400041210006900145260000800214300001300222490000700235520180100242653001802043653002502061653001502086653002002101653001502121653001202136653001402148653002802162653002102190653001402211653001302225653001102238100001902249700002102268700001902289700001902308700002202327700002402349700001802373700002702391700002202418700002402440856013602464       2004                        eng d00aPhylogeny and evolution of basils and allies (Ocimeae, Labiatae) based on three plastid DNA regions0 aPhylogeny and evolution of basils and allies Ocimeae Labiatae ba  cApr  a277–990 v313 aA phylogeny of basils and allies (Lamiaceae, tribe Ocimeae) based on sequences of the trnL intron, trnL-trnF intergene spacer and rps 16 intron of the plastid genome is presented. Several methods were used to reconstruct phylogenies and to assess statistical support for clades: maximum parsimony with equally and successively weighted characters, bootstrap resampling, and Bayesian inference. The phylogeny is used to investigate the distribution of morphological, pericarp anatomy, chemical, and pollen characters as well as the geographical distribution of the clades. Tribe Ocimeae is monophyletic and easily diagnosable with morphological synapomorphies. There are monophyletic clades within Ocimeae that broadly correspond to currently recognised subtribes: Lavandulinae, Hyptidinae, Ociminae, and Plectranthinae. Only Lavandulinae has clear non-molecular synapomorphies. Several currently recognised genera are not monophyletic. Floral morphology consistent with sternotribic pollination is most common in Ocimeae, but there are independent departures from this model. Buzz pollination is likely in some species, the only postulated occurrence of this within Lamiaceae. Quinone diterpenoids and flavones in the leaf exudates differ in their distributions across the phylogeny and this could contribute to differences in the recorded medicinal as well as pesticidal uses of the species in the different clades. Mapping geographic distribution on to an ultrametric phylogenetic tree produced using non-parametric rate smoothing supports an Asiatic origin for Ocimeae. There are several secondary occurrences in Asia arising from the African Ociminae and Plectranthinae clades. Colonisation of Madagascar occurred at least five times, and New World colonisation occurred at least three times.10aBayes Theorem10aBiological Evolution10aDiterpenes10aDNA: Intergenic10aFlavonoids10aIntrons10aLamiaceae10aMolecular Sequence Data10aOcimum basilicum10aPhylogeny10aPlastids10aPollen1 aPaton, Alan, J1 aSpringate, David1 aSuddee, Somran1 aOtieno, Donald1 aGrayer, Renée, J1 aHarley, Madeline, M1 aWillis, Fiona1 aSimmonds, Monique, S J1 aPowell, Martyn, P1 aSavolainen, Vincent  uhttps://lamiaceae.myspecies.info/content/phylogeny-and-evolution-basils-and-allies-ocimeae-labiatae-based-three-plastid-dna-regions00780nas a2200229   4500008004100000245011200041210006900153260000800222300001400230490000700244520009400251653001100345653002000356653001300376653001400389653002600403653001100429100001600440700002200456700002200478856005000500       2012                        eng d00aA preliminary phylogeny of the genus Cunila D. Royen ex L. (Lamiaceae) based on ITS rDNA and trnL-F regions0 apreliminary phylogeny of the genus Cunila D Royen ex L Lamiaceae  cNov  a739–7470 v653 aMolecular Phylogenetics and Evolution, 65 (2012) 739-747. doi:10.1016/j.ympev.2012.07.03010aCunila10aCunila taxonomy10aITS rDNA10aLamiaceae10aPhylogenetic analyses10atrnL-F1 aAgostini, G1 aEcheverrigaray, S1 aSouza-Chies, T, T  uhttp://dx.doi.org/10.1016/j.ympev.2012.07.03000900nas a2200289   4500008004100000245007700041210006900118260000800187300001400195490000700209520009400216653001600310653001700326653001000343653001400353653001600367653001200383100002100395700001800416700001700434700002500451700002600476700002000502700001800522700002000540856005000560       2013                        eng d00aMolecular phylogeny of tribe Stachydeae (Lamiaceae subfamily Lamioideae)0 aMolecular phylogeny of tribe Stachydeae Lamiaceae subfamily Lami  cDec  a535–5510 v693 aMolecular Phylogenetics and Evolution, 69 (2013) 535-551. doi:10.1016/j.ympev.2013.07.02410aEurystachys10aIncongruence10anrITS10aParaphyly10aPlastid DNA10aStachys1 aSalmaki, Yasaman1 aZarre, Shahin1 aRyding, Olof1 aLindqvist, Charlotte1 aBräuchler, Christian1 aHeubl, Günther1 aBarber, Janet1 aBendiksby, Mika  uhttp://dx.doi.org/10.1016/j.ympev.2013.07.02403693nas a2200205   4500008004100000245011100041210007100152300001400223490000700237520294500244653002603189653001403215653001403229653002403243653001303267100002603280700002103306700002003327856014003347       2010                        eng d00aMolecular phylogeny of Menthinae (Lamiaceae, Nepetoideae, Mentheae)–taxonomy, biogeography and conflicts0 aMolecular phylogeny of Menthinae Lamiaceae Nepetoideae Mentheae–  a501–5230 v553 aAlthough the subfamily Nepetoideae (Lamiaceae) is considered to be monophyletic, relationships between tribes, subtribes and genera within the subfamily are poorly understood as complex and possi- bly homoplasious morphological characters make taxa difficult to delimit. DNA sequence data from three regions (chloroplast: trnK intron; trnL-F; nuclear: ITS) in total including 278 accessions, representing 38 out of 40 genera of subtribe Menthinae and 11 outgroup genera, were used to reconstruct the evolution- ary history, test previous hypotheses of classification, explain biogeographic patterns and elucidate char- acter evolution. Using maximum parsimony (MP) and Bayesian analysis phylogenetic reconstructions based on nuclear and chloroplast sequence data were incongruent, consequently the data were analyzed separately.
Both nuclear and chloroplast datasets provide strong support for three major lineages: the ``Satureja'', ``Micromeria'' and ``Clinopodium'' group. The first contains members of Satureja and Gontscharovia. In the second lineage Micromeria s.str. and Origanum were resolved as monophyletic, Pentapleura and Zataria indicated as sister groups. Thymbra includes two species of Satureja turning the latter genus polyphyletic. Thymus is revealed as paraphyletic with respect to Argantoniella and Saccocalyx in both and Origanum in the plastid dataset only. In the third lineage, the Clinopodium-group, branching pattern is highly incon- gruent among datasets and possibly influenced by recent and ancient hybridization, chloroplast capture and incomplete lineage sorting. However, identical terminal groups are inferred in both analyses. A Madagascan lineage of ``Micromeria'', sister to the recently described South African Killickia, is suggested to represent a new genus. The Himalayan Clinopodium nepalense group and the tropical African C. abyssinicum alliance are monophyletic but indicated in different positions. Both groups appear in the ITS phylogeny in a clade with Cyclotrichium and Mentha, relationships not suggested previously. The enig- matic Micromeria cymuligera is close to Mentha and possibly is a representative of this genus. Species of Acinos, now regarded as part of Clinopodium, are mixed up with species of Ziziphora, questioning either the inclusion of Acinos in Clinopodium or generic distinctness of Ziziphora. All data sets suggest a mono- phyly of the New World taxa and argue for long distance dispersal from the Old World, rather than a vicariance explanation. Bystropogon marks the split up between the two lineages. Inclusion of 22 genera intermixed with Clinopodium spp. in the New World clade provides evidence that the current circum- scription of the genus is highly unnatural. Low sequence divergence resulting in low phylogenetic reso- lution especially at the base of the clade indicate a rapid radiation accompanied by considerable ecological diversification and speciation.10aGeneric delimitations10aLamiaceae10aMenthinae10aMolecular phylogeny10aSatureja1 aBräuchler, Christian1 aMeimberg, Harald1 aHeubl, Günther  uhttps://lamiaceae.myspecies.info/content/molecular-phylogeny-menthinae-lamiaceae-nepetoideae-mentheae%E2%80%93taxonomy-biogeography-and